Nonmammalian Genomic Analysis: A Practical GuideBruce Birren, Eric Lai Offering detailed protocols for those needing to construct a variety of maps and isolate genes, this unique book is intended to popularize the new techniques of genome analysis derived from the Human Genome Project. The power of these new methods is often most striking when applied to problems outside of human genetics, particularly the nonmammalian systems on which many researchers focus. Many of these organisms are economically important and biologically rich. Nonmammalian Genomic Analysis: A Practical Guide covers the "how to" aspects of preparation, handling, cloning, and analysis of large DNA and the creation of chromosome and genome maps. This lab manual facilitates the transfer of these technologies to small "low tech" environments and allows them to be used by those with no background in genome mapping or large-fragment cloning. Like having a local expert, this collection provides procedures for anyone, anywhere, and allows the replication of others' success.
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From inside the book
Results 1-5 of 87
Page 14
... containing low levels of nucleases should be used for DNA preparation. (2) Most enzymes are less active in the presence of agarose, and hence cell walls are more efficiently digested with the cells in solution rather than after ...
... containing low levels of nucleases should be used for DNA preparation. (2) Most enzymes are less active in the presence of agarose, and hence cell walls are more efficiently digested with the cells in solution rather than after ...
Page 16
... containing 0.5 pig DNA per lane. (2) Arrest cell growth either by chilling cultures by swirling flasks in ice water or by adding chloramphenicol to a final concentration of 0.2 mg/ml and continuing incubation for 1 hr. Chloramphenicol ...
... containing 0.5 pig DNA per lane. (2) Arrest cell growth either by chilling cultures by swirling flasks in ice water or by adding chloramphenicol to a final concentration of 0.2 mg/ml and continuing incubation for 1 hr. Chloramphenicol ...
Page 20
... containing exclusively A/T or G/C Apal GGGCCVC Campylobacter jejuni Asn I (AseI) ATWTAAT Rhodobacter sphaeroides 1:2.4. BglI GCCNNNNWNGGC Mollicutes BssHII GVCGCGC Campylobacter jejuni Dral TTTWAAA Streptomyces coelicolor M145 Eagl ...
... containing exclusively A/T or G/C Apal GGGCCVC Campylobacter jejuni Asn I (AseI) ATWTAAT Rhodobacter sphaeroides 1:2.4. BglI GCCNNNNWNGGC Mollicutes BssHII GVCGCGC Campylobacter jejuni Dral TTTWAAA Streptomyces coelicolor M145 Eagl ...
Page 37
... containing the chDNAs. Agarose bead encapsulation has been used for S. cer. evisiae, Hansenula wingei, and S. pombe (all commercially available from BRL), demonstrating that the technique can be used to prepare chDNAs of at least 5.7 Mb ...
... containing the chDNAs. Agarose bead encapsulation has been used for S. cer. evisiae, Hansenula wingei, and S. pombe (all commercially available from BRL), demonstrating that the technique can be used to prepare chDNAs of at least 5.7 Mb ...
Page 42
... containing the molecules too small to be resolved under the PFGE conditions used; (2) a zone where a size range of molecules is resolved; (3) an inflection point; (4) a second zone where a different size range of molecules is resolved ...
... containing the molecules too small to be resolved under the PFGE conditions used; (2) a zone where a size range of molecules is resolved; (3) an inflection point; (4) a second zone where a different size range of molecules is resolved ...
Contents
1 | |
25 | |
61 | |
Chapter 4 Generating and Using DNA Markers in Plants | 75 |
Chapter 5 Genome Mapping of Protozoan Parasites by Linking Clones | 135 |
Chapter 6 Macrorestriction Mapping and Analysis of Bacterial Genomes | 165 |
Chapter 7 Cosmid Cloning with Small Genomes | 197 |
Chapter 8 Construction of PI Artificial Chromosome PAC Libraries from Lower Vertebrates | 223 |
Chapter 9 The Selection of ChromosomeSpecific DNA Clones from African Trypanosome Genomic Libraries | 257 |
Chapter 10 Analysis of the Dictyostelium discoideum Genome | 293 |
Chapter 11 Integrated Genome Mapping by Hybridization Techniques | 319 |
Index | 347 |
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Common terms and phrases
Acad AFLP agarose gel aliquots amplification bacterial bacteriophage bands blot buffer cells centrifuge cerevisiae chDNAs chromosomes coli colonies containing contigs cosmid Dictyostelium DNA fragments DNA molecules DNA sequence EDTA electrophoretic karyotype ethidium bromide filters Final concentration gel electrophoresis gene Genet genomic DNA hybridization identified Incubate insert isolation karyotype lane large DNA ligation linear linking clones markers method mg/ml molecular NaCl Natl Novozym Nucleic Acids Res nucleotide oligonucleotide PAC cloning partial digestion PFGE physical mapping plasmid plates plugs polymerase polymorphisms prepare primers probe procedure proteinase K protocol protoplasts pulse pulsed-field gel RAPD reaction repeat restriction digestion restriction endonuclease restriction enzyme restriction fragments restriction mapping resuspend RFLP room temperature samples selected separation Sfil solution Southern blot specific spheroplasts sterile strains switch techniques tion Tris-HCl trypanosome tube V/cm vector vector DNA yeast yeast artificial chromosomes