Nonmammalian Genomic Analysis: A Practical GuideBruce Birren, Eric Lai Offering detailed protocols for those needing to construct a variety of maps and isolate genes, this unique book is intended to popularize the new techniques of genome analysis derived from the Human Genome Project. The power of these new methods is often most striking when applied to problems outside of human genetics, particularly the nonmammalian systems on which many researchers focus. Many of these organisms are economically important and biologically rich. Nonmammalian Genomic Analysis: A Practical Guide covers the "how to" aspects of preparation, handling, cloning, and analysis of large DNA and the creation of chromosome and genome maps. This lab manual facilitates the transfer of these technologies to small "low tech" environments and allows them to be used by those with no background in genome mapping or large-fragment cloning. Like having a local expert, this collection provides procedures for anyone, anywhere, and allows the replication of others' success.
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From inside the book
Results 1-5 of 54
Page 25
... insert DNA cloning systems (Burke et al., 1987; Sternberg, 1990; Shizuya et al., 1992; Iaonmou et al., 1994), and chromosome fragmentation techniques (Vollrath et al., 1988, Ferrin and Camerini-Otero, 1991; Strobel and Dervan, 1991) ...
... insert DNA cloning systems (Burke et al., 1987; Sternberg, 1990; Shizuya et al., 1992; Iaonmou et al., 1994), and chromosome fragmentation techniques (Vollrath et al., 1988, Ferrin and Camerini-Otero, 1991; Strobel and Dervan, 1991) ...
Page 37
... inserts and Agarose Bead Encapsulation DNA concentration profoundly affects DNA migration during PFGE, so when ... insert technique, chDNA plugs are formed in typical plug molds, then chopped with a razor blade into sizes small ...
... inserts and Agarose Bead Encapsulation DNA concentration profoundly affects DNA migration during PFGE, so when ... insert technique, chDNA plugs are formed in typical plug molds, then chopped with a razor blade into sizes small ...
Page 51
... insert size. While cosmids have been used to map the S. pombe genome. A B kb - 205 kb 1020 1145 - 1350 1350 - 1450 1 2 3 4 5 C 1 2 3 4 5 Figure 2.6 RecA-assisted restriction enzyme cleavage (RARE). Panel A: C, ChDNAs of C. albicans FC18 ...
... insert size. While cosmids have been used to map the S. pombe genome. A B kb - 205 kb 1020 1145 - 1350 1350 - 1450 1 2 3 4 5 C 1 2 3 4 5 Figure 2.6 RecA-assisted restriction enzyme cleavage (RARE). Panel A: C, ChDNAs of C. albicans FC18 ...
Page 52
... insert cloning systems including P1 bacteriophage (Sternberg, 1990; Pierce et al., 1992), bacterial and P1 artificial chromosomes (Shizuya et al., 1992; Ioannou et al., 1994), and yeast artificial chromosomes (Burke et al., 1987) will ...
... insert cloning systems including P1 bacteriophage (Sternberg, 1990; Pierce et al., 1992), bacterial and P1 artificial chromosomes (Shizuya et al., 1992; Ioannou et al., 1994), and yeast artificial chromosomes (Burke et al., 1987) will ...
Page 59
... . Targeted integration into the Acremonium chrysogenum genome: Disruption of the pcb C gene. Curr Genet, 24, 421–427. Wang, Y-K., and Schwartz, D.C. (1993). Chopped inserts: A convenient Electrophoretic Karyotyping in Fungi 59.
... . Targeted integration into the Acremonium chrysogenum genome: Disruption of the pcb C gene. Curr Genet, 24, 421–427. Wang, Y-K., and Schwartz, D.C. (1993). Chopped inserts: A convenient Electrophoretic Karyotyping in Fungi 59.
Contents
1 | |
25 | |
61 | |
Chapter 4 Generating and Using DNA Markers in Plants | 75 |
Chapter 5 Genome Mapping of Protozoan Parasites by Linking Clones | 135 |
Chapter 6 Macrorestriction Mapping and Analysis of Bacterial Genomes | 165 |
Chapter 7 Cosmid Cloning with Small Genomes | 197 |
Chapter 8 Construction of PI Artificial Chromosome PAC Libraries from Lower Vertebrates | 223 |
Chapter 9 The Selection of ChromosomeSpecific DNA Clones from African Trypanosome Genomic Libraries | 257 |
Chapter 10 Analysis of the Dictyostelium discoideum Genome | 293 |
Chapter 11 Integrated Genome Mapping by Hybridization Techniques | 319 |
Index | 347 |
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Common terms and phrases
Acad AFLP agarose gel aliquots amplification bacterial bacteriophage bands blot buffer cells centrifuge cerevisiae chDNAs chromosomes coli colonies containing contigs cosmid Dictyostelium DNA fragments DNA molecules DNA sequence EDTA electrophoretic karyotype ethidium bromide filters Final concentration gel electrophoresis gene Genet genomic DNA hybridization identified Incubate insert isolation karyotype lane large DNA ligation linear linking clones markers method mg/ml molecular NaCl Natl Novozym Nucleic Acids Res nucleotide oligonucleotide PAC cloning partial digestion PFGE physical mapping plasmid plates plugs polymerase polymorphisms prepare primers probe procedure proteinase K protocol protoplasts pulse pulsed-field gel RAPD reaction repeat restriction digestion restriction endonuclease restriction enzyme restriction fragments restriction mapping resuspend RFLP room temperature samples selected separation Sfil solution Southern blot specific spheroplasts sterile strains switch techniques tion Tris-HCl trypanosome tube V/cm vector vector DNA yeast yeast artificial chromosomes